YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42555524, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.92
Transmembrane Helix	114	133	0.94
Non-Cytoplasmic	134	270	0.81
Transmembrane Helix	271	293	0.83
Cytoplasmic	294	748	0.73
Transmembrane Helix	749	772	0.89
Non-Cytoplasmic	773	808	0.68
Transmembrane Helix	809	835	0.81
Cytoplasmic	836	881	0.87
Transmembrane Helix	882	904	0.78
Non-Cytoplasmic	905	962	0.94
Transmembrane Helix	963	981	0.96
Cytoplasmic	982	1012	0.90
Transmembrane Helix	1013	1037	0.80
Non-Cytoplasmic	1038	1059	0.90
Transmembrane Helix	1060	1080	0.91
Cytoplasmic	1081	1119	0.97
Transmembrane Helix	1120	1143	0.90
Non-Cytoplasmic	1144	1170	0.83
Transmembrane Helix	1171	1193	0.61
Cytoplasmic	1194	1348	0.87
Transmembrane Helix	1349	1373	0.89
Non-Cytoplasmic	1374	1390	0.84
Transmembrane Helix	1391	1410	0.94
Cytoplasmic	1411	1445	0.80
Transmembrane Helix	1446	1472	0.78
Non-Cytoplasmic	1473	1511	0.76
Transmembrane Helix	1512	1533	0.59
Cytoplasmic	1534	1549	0.86
Transmembrane Helix	1550	1574	0.84
Non-Cytoplasmic	1575	1608	0.84
Transmembrane Helix	1609	1627	0.74
Cytoplasmic	1628	1669	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDPIPKAKS HTRNSTRSDD FPQPSDNAPG ICRICRGEGT PEEPLFYPCK CSGSIKYVHQ  60
   61 DCLMEWLSHS QKKYCELCKT SFRFTKLYAP DMPQSLPVHI FIGHMARYLL QNVLVWLRGA 120
  121 MAISVWLCWL PYFMRTVWSF MFWISDEGFG NSAASQVNGT LPSSGAEISS SVLDIDTCPS 180
  181 SPLFAPTTTS ASAAKALFDG LSDQNISDFL VRLFLGSWGF SNKSDRSGAS PESANTTASG 240
  241 IPPTLLGEVA FLNNLTRNPT INRAVISILE GQIITILVIV CFILVILVRD YVVQQQPEMR 300
  301 AAAFAVPENP LAQQEPMLVR PEDVEDLPGP DESDDETLDT GEPTASANDV EFAVEVQAET 360
  361 RRRRRTNSEL ALPEGLAAAG YLAADAGNLP TDISPAEERA SVYDYLRIYR QADGDHERIL 420
  421 EIIHEEGLER KLSYWVDVTQ RALREGDDTP GTNVQHGAES IRGRAGSFGS TAASSSRKDF 480
  481 TPGSDESPTP MDAPGEQSSP KGKEREQVPF LPDTEFETVP FLPGSKSTIT RPRAVSDGPQ 540
  541 LQDSVNPLAN NSWSFAGLPP TVPDESPSDE YRRAQSIFAS EQSKKSVHDT ADEAGPSNRP 600
  601 DVPHNEQDNV HRAEPPDSLP SDPQRPQQAD TDPAAEEDRP AGLVNRVTDF MWGDLDEAQQ 660
  661 ERQRALAAEA VAAAGHIAQL DDTDGWETEL EDLHPEAPPP ELGVAENPED PEDMGDAPGA 720
  721 GLDQEAMEDL EDFEGVMELI GMRGPVAGLF QNAIFCAVLV SVTIFACIFV PYNFGRVSVW 780
  781 ILANPMRLVR LVFEFSKLLQ DAAVMAVGFG LWVVINLIDM FTGLIGGFIG AQVLLARKAS 840
  841 WSLWTNAGSR VLDYTFMDIP MSAAEMQNFS AISHSALISV KGNIGALFTI VTKSVGFILG 900
  901 GHFLNSDLSI ESATLAADMA WAKLVDISSA LLKPNSWVIN LSESEGSLPI NPELAHWSGL 960
  961 DRFWAISAGY ATLFFAGALY LRRGSPFSRG HILQAWEAGI IDTLHQASGI MKVIMIISIE1020
 1021 MLVFPLYCGL LLDGALLPLF ENTTFKSRLL FTYNYPLTSV FVHWFVGTGY MFHFALFVSM1080
 1081 CRKIMRQGVL YFIRDPDDPE FHPVRDVLER NLTTQLRKIL FSAFVYGALV IVCLGGVVWG1140
 1141 LSWTVPGVLP VHYSSNEPVL EFPVDLLFYN FLMPLAVNFF KPGDGLHAMY TWWFRTCARG1200
 1201 LRLTYFLFGE RKIDEEGSLQ LGNTHEHQEP PWYKTLFLEL NARYHVVPKT WTDFFDGGDA1260
 1261 KPRTPLNNSE IRSLTRHKNH LKEANQLVES GHFVRAPASD RVKIPKGKKV FLEVDEHGRR1320
 1321 SDGQDDADLY ASNQYQMVYV PPNFRARIFL FIFFIWIFAA VTGVGFTIIP LVFGRRMFKL1380
 1381 LIPQHIRTND IYAFSIGVYL LGTAAYLVFH LRSVWTKIQD GFSAVRASLT AGNLERRTAA1440
 1441 VLLQGVNLVY AYFFLYIVFP LLVSGLMELY LVLPLHTYMH PPTAESVQAS RAGGPEASRH1500
 1501 TVRVIQAWTL GLLYLKLGAR MVTAMFPDTR LALAVRTVTR GWWMRPDTSI LTRAFVLPGL1560
 1561 AIAGAAIFGP PAIAGVFIKY NVIQGVQPGE NELVEAARLA IIYRHSYPAV ALFALLIKNT1620
 1621 IGLVKVFNGW TARIRDEAYL IGERLHNFGA AAAGAGRVRG AWRAGGARL