YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42555521, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.97
Transmembrane Helix	40	60	0.92
Non-Cytoplasmic	61	70	0.79
Transmembrane Helix	71	91	0.94
Cytoplasmic	92	110	0.94
Transmembrane Helix	111	134	0.92
Non-Cytoplasmic	135	141	0.86
Transmembrane Helix	142	162	0.95
Cytoplasmic	163	171	0.80
Transmembrane Helix	172	196	0.85
Non-Cytoplasmic	197	208	0.84
Transmembrane Helix	209	230	0.91
Cytoplasmic	231	243	0.92
Transmembrane Helix	244	266	0.87
Non-Cytoplasmic	267	281	0.74
Transmembrane Helix	282	301	0.93
Cytoplasmic	302	314	0.80
Transmembrane Helix	315	335	0.89
Non-Cytoplasmic	336	341	0.81
Transmembrane Helix	342	364	0.90
Cytoplasmic	365	373	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTDSPQTK ESHDLENNTQ PTEEKQGSSA FKALGWLDRL LAVWILLAMI IGILLGNFVP  60
   61 STGAALEKGK FVGVSVPIAV GLLVMMYPIL CKVRYESLHE IFSQRDVWKQ ILFSIFINWI 120
  121 IAPFLMLGLA WAFLPDKPEL RVGLILVGLA RCIAMVLIWN GLAGGDSEYC AILVAINSIL 180
  181 QMALYAPMSV FFISIISGEE GSLEVSYSTV ATSVAVFLGI PLAAAIITRF SLRKLAGPEW 240
  241 YERVFLRIVS PWSLIGLLYT ILILFASQGH QVVHQIVSVV RVAAPLIVYF VVVFFATLLI 300
  301 ARRAGFGYKL STTQSFTAAS NNFELAIAVA ITAFGPSSDQ ALAATVGPLI EVPVLLGLVY 360
  361 LLRWVSDRWN WKI