YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42555224, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRYERVNA QDEEDFHNNN NNNNNNRISP VPHSPPPSFH SRAPSPQRQV DNTLADAFDD  60
   61 DDDSDDEVDD RQRLMRQNST PSFDTTNATS TPAQPAVPAP TPSASRSTRV VGGGSGSDGV 120
  121 FANLSARPER GGNSDPEKDE LPPSYEQAAA DAAPPYWETT ILAPGMGGPD EVYIDGMPVG 180
  181 SFFSFVWNGM ISTSFQLVGF LLTYLLHSTH AAKNGSRAGL GITLIQYGFY MKGASEDEPP 240
  241 AMSGPDGYAA PPDPNSHNFK QGDVTDEDLG NITGSEWLGY VLMVVGWFLL IKSVAEFLRA 300
  301 RRHEQLVLQS PDRGLSVPII AEGESNERVV

Type	Start	End	Confidence
Cytoplasmic	1	183	0.65
Transmembrane Helix	184	206	0.79
Non-Cytoplasmic	207	276	0.83
Transmembrane Helix	277	295	0.85
Cytoplasmic	296	330	0.90