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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42555201, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.34
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQADDAAA SQANIEDGDL KEHVHDELDK IQQQRSTATV FPEPLRESDS EDSDDEDNGP  60
   61 AQAPPMFMNM NQSIYGLIAQ ASNRVDFNDR FDGMSSDEEG ESSQNTRTES IARTSILQPA 120
  121 GKGKDKVHRR RKLSEHKLLR SLPALPKLRS RHKSQHSTLP APEEVADEAD DEHGDGGLLP 180
  181 APALTLTRQD TQDRLAPVMS RMLEAKADLS IRPSFDLDRL SSDVSRSSDS DEVSALSRKL 240
  241 KEIFEFDEYE QVIEEYPCWL LQSVLLQGYM YITSKHICFY AYLPKKTHEA VKSGYLSKSG 300
  301 KRNPSYARFW FRLKGDVLTY YKTATDVYFP HGQIDLRYGI SASIVDTDKE ALHFVVETRH 360
  361 RTYKFKADSA PSAKEWVKSL QRVIFRSHND GDSVKISLPI KNVMDIEDTQ MISFADTCKI 420
  421 RVIDNDETYA IDEYFFSFFS FGKEAINVLK ILIEDSSGAR SAEQVITGDD HDSSQPSSGH 480
  481 ASKAASKRAP SKLSTGKLPD TVKATLAPMS PLSPRSPSQL SPRASMDAPR SSFDGFRRFG 540
  541 KKSLDVTSSI GDHSPRRSFS GRRSTSHQHR QGTTTPKQAH DSEDSFLQSS IENPSISTLS 600
  601 PSSYDEPSAS QILQGSDVFH SPMMRRSAST SRKRDRSGKR TPRSSSAHGD RHHGIPHAAT 660
  661 TGAIHKMGDE QADSQRPATP TLNSITKIGA YPLQRANAFA EYLSRTSQRM GSMFATESLG 720
  721 YVEKVHGMWK GEHRHYDEPQ ELRTDDDGED IDSEADDKMQ TTIDRFRAHF ALPESEKLVA 780
  781 TYFGAIFKVL PLYGKFYISD RSFCFRSLYP GTRTKLILPL KDIENVHKEK GFRYGYYGLT 840
  841 VVIRGHEELF FEFRKPGLRD DCAVTLHQLM ETNRFLEQSG ILDQEEQDDE EAAAAMAERD 900
  901 ELQEARQDEF VDHELTLPRT TSGVSNAPTI LFDNPNSSGL AFKPQKSMKI TCLTIGSRGD 960
  961 IQPYIALCKG LLAEGHKPRI ATHGEFQEWV ESHGIEFARV EGDPGELMRL CIENGTFTWA1020
 1021 FLREANSTFR GWLDDLLDSA YTACEGSELL IESPSAMAGI HIAEKLEIPY FRAFTMPWTR1080
 1081 TRAYPHAFIM PEHKMGGAFN YMTYVMFDNI FWKATAYQVN RWRNKTLGLP STSLEKMQPN1140
 1141 KVPFLYNFSP SVVAPPLDFS DWIRVTGYWF LNEGGGDWKP PQELQDFIAK ARADGKKIVY1200
 1201 VGFGSIIVKD PAKMTQEVID AVLKADVRCI LSKGWSDRIS PKDDPSKPPP DEPVIPAEIH1260
 1261 VITSAPHDWL FSQIDAAAHH GGSGTTGASL RAGIPTIIRP FFGDQFFFST RVEDLGVGVC1320
 1321 VRKWGTNSFG RALWEVTRNE RMIVKARVLG EQIRSESGVD NAIQCIYRDL EYAKSLIKRR1380
 1381 AGKNNAEHGL AEDDDDTEES WTFVGRDEPD PDAVTKKLSD GLAGLGAAGD RPPPLGSQAP1440
 1441 TVGSGSIDMH VGSMDVSGRK DGDNSGWNKT LGCMRRLNGC GDHVHVGYIN SSPVIDTCAM1500
 1501 AKTSRKQPFF GFRGGWLTFW ITVACATDMT LFGYDQGVFS GVVVTQDFLR LHNLVGPTKT1560
 1561 NLLATVTAIY DIGCFFGAVI AFTIGERLGR KKAILLGTAI MSIGTVIKVT SYSLQQMVVG1620
 1621 RIVLGIGNGI NTATAPIWQT ETAQAKWRGK LVILEMAMNI AGFCLVNWIN YGLSFVDGSV1680
 1681 AWRFPLAFQF VFIFVLFATV PWLPESPRWL IAHGRTREAT EILASIEDKP TTSPVVTAQL1740
 1741 HEIQYSVDYE RSHTIKWKDI LLRRNKDTSD TKTLRRLLLG ANTQLMQQFG GINIMSYYMP1800
 1801 TVLINSVGLT ERMARLLSAC NAVSYLIFSS AAILLVERWG RRGLMLLSTA GQLLSFLVIT1860
 1861 ILLRYAVGDK KEVLGSASVA FFFLYFISFG VGMLGVPWLY PTEVNSLPMR TKGAALATGT1920
 1921 NWITNFIVVE ITPIGIQNLG WRFWIVWTVT NALFLPVIYF FYPETANRKL EDMDAYFRGN1980
 1981 PSIIVIKDKD AIIAKRPEKY IEQDQEDIRR EGVEAREVGE KLRITRVPGM SPDAIRTAMG2040
 2041 GSSQRHVQYQ SLPVHHAGHI AVVPAFFASE PVCPLECCPE VELLVLLAH

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