YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42554903, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	131	0.99
Transmembrane Helix	132	154	0.92
Non-Cytoplasmic	155	168	0.86
Transmembrane Helix	169	189	0.95
Cytoplasmic	190	198	0.81
Transmembrane Helix	199	218	0.95
Non-Cytoplasmic	219	228	0.69
Transmembrane Helix	229	247	0.94
Cytoplasmic	248	258	0.76
Transmembrane Helix	259	280	0.90
Non-Cytoplasmic	281	289	0.80
Transmembrane Helix	290	313	0.88
Cytoplasmic	314	357	0.93
Transmembrane Helix	358	380	0.90
Non-Cytoplasmic	381	402	0.86
Transmembrane Helix	403	423	0.94
Cytoplasmic	424	442	0.89
Transmembrane Helix	443	462	0.96
Non-Cytoplasmic	463	469	0.77
Transmembrane Helix	470	491	0.88
Cytoplasmic	492	505	0.83
Transmembrane Helix	506	529	0.77
Non-Cytoplasmic	530	535	0.91
Transmembrane Helix	536	556	0.93
Cytoplasmic	557	612	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQPNSSRSS TTLENGTHPD EATFAPLNTH QSTMSRVRRS LSHSHSRDGS QKEHRDPDLD  60
   61 IDLPYRTLSA NANLDEYRVE VPGGAIPGPV QPEEIARKST NHEPGTERRY KLVTFTPGDP 120
  121 ENPKNWSKAY KWWCTMCVAL TCFVVAFCSS VITADIVGVT NDLNVSNELA LASISLFVVG 180
  181 FGVGPMAFAP LSEIYGRRII YGSTLFIAFI FIIPCAVAKN IETLLVCRAI DGIAFSAPMT 240
  241 LVGGTLADMW RNEERGVPMA AFSAAPFIGP AIGPLVGGFL SDAAGWRWLY WIQLILAFVV 300
  301 WILITFTVPE TYAPTILARR ARKLRAETGE TDHVTEQELD LRPISERLRI FLIRPFQLLF 360
  361 GELIVCLISL YMSVLYGLLY MFFVAYPIVY QKGKGYSAGK TGLMFIPIAV GVLMSAFCAP 420
  421 FVNKHYLTLV KKHNGNPPAE VRLIPMMISC WCIPIGLFIF AWTSYSDLSW AGPAMGGFPV 480
  481 GFGFIFLYNS ANNYLVDSYQ HQAASALAAK TCIRSFWGAA VVLFTEQMYE RLGDQWASSL 540
  541 LAFLGLACCA IPFMFWKYGA KIRERSKYAY AGEDESVDDI EKVKSHNASS GQVRNDSDDE 600
  601 DLRRARSYVS NP