YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42554849, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALNATSFA SFNQTKDYFV VLEEVSKYNV QLNMVEKLWA AWYLWMQNDT LATGIMSFVL  60
   61 HELVYFGRCI PFMLMDFIPY FQQFRIQKQK IPTIKEQWDC AAIVLISHFT AELPQIWFFH 120
  121 PIATYFGMDY GVPFPPVWKM ALQIAICFVM EDAWHYWFHR ALHYGPLYKA IHKMHHTYSA 180
  181 PFGLAAEYAS PIETALLGIG VVGCPIVLLA VTGELHLFTM YTWIVLRLFQ AIDSHSGYDF 240
  241 PWSLRHILPV WAGAHHHDLH HEKFIGNYAS SFTWWDYCLD TEAGADAHKR RREKKLAAIK 300
  301 AQKQQ

Type	Start	End	Confidence
Cytoplasmic	1	99	0.50
Transmembrane Helix	100	119	0.68
Non-Cytoplasmic	120	139	0.64
Transmembrane Helix	140	158	0.76
Cytoplasmic	159	177	0.60
Transmembrane Helix	178	192	0.38
Non-Cytoplasmic	193	194	0.42
Transmembrane Helix	195	218	0.80
Cytoplasmic	219	305	0.70