YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46124617, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPLSNSIRV FGGTHYLKAY LTPSRATMSK TTLATMACLG AGGGAAITAA VYSIRGGKRV  60
   61 EETNTLATPP PTTNSFAALP APTASPSIPP TQVFGPPAGA PPSSTPVDIN AIVNPAGLFE 120
  121 YGFPGPVADV ANRSGLVSSY DRRLRNPHWV VEHITPQSLA IREGDRKHSN FVEDESVPQK 180
  181 FRAGLKDYYR SGFDRGHQVP AADCKWSQKA MDDTFYLSNM CPQVGEGFNR DYWAHFEDFC 240
  241 RRLTVKYPSV RIVTGPLYLP KKEADGKWYV KYEMIGSPPS VAVPTHFYKV IFAEDGRAGG 300
  301 NVALGAFVLP NAPIPNSKPI GDFEVPLEAV ERASGLEFAT KLPPQRRRRL CADHTCALVI 360
  361 KEYAERQKAF PKK

Type	Start	End	Confidence
Cytoplasmic	1	31	0.46
Transmembrane Helix	32	50	0.50
Non-Cytoplasmic	51	373	0.95