YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46124529, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISSVLTYF ALGYAALTIF LYAMSLVVPQ AAFAARGLAS YVSLLVVAAY GVFASIFLTL  60
   61 IGKQGIAQWA VGRSFHYLML YTTGVEFVIE DPDNVLGTTR PAVFVGNHQT ELDVLMLGRM 120
  121 FPKYCSVTAK ASLKKVPFLG WFMSLSGSIF IDRKNSKDAR DAMKGAASEI QSKRQSVYMF 180
  181 PEGTRSYAKE PMLLPFKKGA FHLAVEAGVP IVPCVVANYS HVLYPKTFTF NSGKIPVKVL 240
  241 KPIPTKGLTA ADVEELTRTT RELMLNELVT VTAKARGQPM AVPASLSDST GKSSAIDTNG 300
  301 SAQ

Type	Start	End	Confidence
Cytoplasmic	1	6	0.75
Transmembrane Helix	7	32	0.81
Non-Cytoplasmic	33	37	0.65
Transmembrane Helix	38	61	0.86
Cytoplasmic	62	303	0.64