YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46125821, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAPEPEQTP FEAVSVHTSR IQRKYQALLD QSTPFVLYRW VGTVVCLVLF FLRILVAQGW  60
   61 YIVAYALGIY LLNLFLAFLQ PKFDPSNEEA DNDMEDGSVG TLPTKSDEEF KPFIRRLPEF 120
  121 KFWYWATRAI VIGFTCSWFE VFNVPVFWPV LVMYWFILFF LTMRKQIQHM IKYRYVPFTV 180
  181 GKKNYAKNSS

Type	Start	End	Confidence
Cytoplasmic	1	35	0.93
Transmembrane Helix	36	55	0.94
Non-Cytoplasmic	56	60	0.72
Transmembrane Helix	61	79	0.93
Cytoplasmic	80	121	0.93
Transmembrane Helix	122	139	0.92
Non-Cytoplasmic	140	145	0.67
Transmembrane Helix	146	164	0.92
Cytoplasmic	165	190	0.96