YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46125819, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRPTARRLA ASAAKAAAAP TSHTLNVARA QGVSRGLTGA IGNTPLIRLN RLSDETGCEV  60
   61 LGKAEFMNPG GSVKDRAALY VVKDAEERGL LKPGGTVVEG TAGNTGIGLA HVCRSRGYKL 120
  121 VIYMPNTQSQ GKIDLLRLLG AEVYPVPAVA FDNPENYNHQ ARRHAERLDN AVWTNQFDNT 180
  181 ANRRAHIETT GPEIWAQTDG KVDAFTCATG TAGTLAGITR YLKDVSNGRV KSFLADPPGS 240
  241 VLHSYVSSGG KLNERTGSSI TEGIGQGRIT DNLQPDIGLV DGSLHISDEK SIKMVYRCLD 300
  301 EEGLYLGASS SLNVVAAKEV AEKLGKGHTV VTVLCDGAYR YADRLFSRKW LTDKKLLGAI 360
  361 PKHLEKYIVL P

Type	Start	End	Confidence
Signal Peptide	1	30	0.90
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	371	0.99