YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42554599, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKGVFSYW WFPVLSGLVW LGMLLGLLLE WQINQHGRRY PTQSIHSDVA YISNVGADRL  60
   61 WPLFITGCVL TSIFLDAAFL SERWLRHKGR LAPNTTLMEK VLTWLSIAFA AVGTVGLICL 120
  121 SIFRTGRYTR LHHTFLALFI GGYLISAVFI CWEYQRLGII NPKDYREHRV LRISFWVKLT 180
  181 FILVEVALII AFGVTSRIKQ RNAAAILEWV ISFIFTFYAI SFVIDLYPAI RTKPRHARHP 240
  241 KYVPSAIADS SSPSHEGSRS DINDRRDVEM AQNTPPRDF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.87
Transmembrane Helix	9	29	0.95
Non-Cytoplasmic	30	59	0.95
Transmembrane Helix	60	80	0.96
Cytoplasmic	81	100	0.95
Transmembrane Helix	101	123	0.96
Non-Cytoplasmic	124	131	0.82
Transmembrane Helix	132	154	0.91
Cytoplasmic	155	174	0.93
Transmembrane Helix	175	195	0.95
Non-Cytoplasmic	196	204	0.86
Transmembrane Helix	205	229	0.87
Cytoplasmic	230	279	0.99