YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42554572, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDPVMQVE DKIAPGPSAN NDKPAVEETI IRQTIITTTE DEAHEHIAAS NGSASAATSP  60
   61 TTGAASRPRL KKDNSTPNMN GPLYMQTAGN KTVLVRRLKR KEESTWKHLS RWFVENQIGL 120
  121 SFNLLALIFL AQTFIPKARD YTQKFFHLSY HNSQSGQYRI GYDDAYFITF CIILFTGLRA 180
  181 ATMEYVLAPI GRWQGVDNRK NLTRFSEQAW LMVYYTVFWP WGVYIYCTSP HYMSMENLWT 240
  241 DWPNRELDGI MKAYLLCQWA FWLQQMIVIN IEERRKDHWQ MFTHHIVTTA LIFACYAYHH 300
  301 TRVGNFILVI MDVVDLFLPL AKCLKYCGYK KICDVMFGLF VVSWFFARHV LYIAVCWSIY 360
  361 SDTPRIMPTG CFKGNNENMI GPLNPPAGWG YLVEPFINPQ GLVCYNETVK WGFLGPLLFL 420
  421 QAITIGWFTM IVRVIVKVLK GGDAEDVRSD DEGGEEEEEE EFVYEEAQPL EEEVGVEALD 480
  481 LRNWERRSGV KKQASSSGVS LPGHSDRKEL LGRIGCEKQV D

Type	Start	End	Confidence
Cytoplasmic	1	115	0.95
Transmembrane Helix	116	135	0.87
Non-Cytoplasmic	136	164	0.91
Transmembrane Helix	165	188	0.84
Cytoplasmic	189	208	0.93
Transmembrane Helix	209	228	0.91
Non-Cytoplasmic	229	249	0.84
Transmembrane Helix	250	269	0.88
Cytoplasmic	270	280	0.84
Transmembrane Helix	281	300	0.91
Non-Cytoplasmic	301	305	0.80
Transmembrane Helix	306	324	0.82
Cytoplasmic	325	334	0.68
Transmembrane Helix	335	356	0.83
Non-Cytoplasmic	357	411	0.89
Transmembrane Helix	412	432	0.85
Cytoplasmic	433	521	0.94