YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42554571, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKTKYQTA PQSDPDDDYT HAPPAYAEGS AARDETQGLF GAPRDSEDNL PDDFKFGGSV  60
   61 AEATVDIRNQ FVRKVYTILT VQLLATAGVS SLTFFSTGYK DWIQSHPGVV WASLFGSMIF 120
  121 MGLTYWKRKS YPTNLLFLSL FTLAEAYTIS VIVSFYKTSI VLNAVVLTAG IFVFLTLFAC 180
  181 QTKYDFTSWM PYLFGALWGL VIFGFMAMFF PYSSTGELIY GGLAALIFSG YILVDTQLVL 240
  241 RHHHVEEEIA AAISLYLDII NLFLAILRIL NSQSNN

Type	Start	End	Confidence
Cytoplasmic	1	75	0.99
Transmembrane Helix	76	97	0.92
Non-Cytoplasmic	98	106	0.75
Transmembrane Helix	107	126	0.94
Cytoplasmic	127	133	0.87
Transmembrane Helix	134	153	0.93
Non-Cytoplasmic	154	159	0.74
Transmembrane Helix	160	180	0.94
Cytoplasmic	181	188	0.86
Transmembrane Helix	189	210	0.92
Non-Cytoplasmic	211	217	0.80
Transmembrane Helix	218	239	0.89
Cytoplasmic	240	248	0.89
Transmembrane Helix	249	270	0.83
Non-Cytoplasmic	271	276	0.82