YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46136137, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.86
Transmembrane Helix	14	33	0.91
Non-Cytoplasmic	34	39	0.85
Transmembrane Helix	40	61	0.96
Cytoplasmic	62	81	0.95
Transmembrane Helix	82	104	0.91
Non-Cytoplasmic	105	142	0.95
Transmembrane Helix	143	162	0.95
Cytoplasmic	163	173	0.80
Transmembrane Helix	174	192	0.93
Non-Cytoplasmic	193	213	0.80
Transmembrane Helix	214	236	0.83
Cytoplasmic	237	242	0.71
Transmembrane Helix	243	263	0.86
Non-Cytoplasmic	264	273	0.82
Transmembrane Helix	274	296	0.89
Cytoplasmic	297	304	0.82
Transmembrane Helix	305	324	0.93
Non-Cytoplasmic	325	329	0.76
Transmembrane Helix	330	352	0.67
Cytoplasmic	353	429	0.76
Transmembrane Helix	430	453	0.65
Non-Cytoplasmic	454	467	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTATTSLS RTEILTLSTI SGASCAVLAN TLHGDGEPLI ASIALSFLGF SLCFAMIRWL  60
   61 GPTFMRAGFR GRDMGKLQRT EIPECMGAVC AAVYLLSLIV FIPFPFYKDI VAATSGGGNR 120
  121 DVVVELEQVS QGRFLHKFPH NKLASFLSAI ISLQTIAFLG IGDDLFDIRW RHKWWIPGIA 180
  181 SIPLLVVYFV DFDVTSIVLP LQLQPYLGEL FDLGALYYVY MACVAMFCPQ SINMLAGING 240
  241 IEVSQCVVVA LLLAFNDCLY LFTPYPHPAT DSHLFSLYFL LPWIGVSCAL LCHNWYPAKV 300
  301 FVGDTYCYFS GMVFAVVGIL GHFSKTLGLL LVPQIFNFLY SCPQVFGLIP CPRHRLPHFN 360
  361 ARSGLLEPSV TPWSAERQPH PLVAHGLHIL SQLRLVKVTV DKNGQFVETS NLTILNLWLV 420
  421 WRGPLREDRL ALEVTMLQLV VGLFGLFVRH RLALLVFKED NWGTIAQ