YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46136121, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGYVEVMAD GGTGQKLTYA TTVVAGVASV IATILSVISI MLQAKNYRKP LLQRYVVRIL  60
   61 LMVPIYSIAS WTSMVSLKAA AFLDPIRDIY EAFTIYTFFQ LLINYLSGER SLIIMTHGRA 120
  121 PVHHLWPLNH VLPKVDISDP HTFLSIKRGI LQYAWLKPIL ATSAIIMKAT GTYQEGYIGL 180
  181 TSGYLWSGII YNISVTVSLY ALGLFWVCMN KDLKPFRPVP KFLCIKLIIF ASYWQGFFLS 240
  241 ILVFLGAIPD DVEGYTSDNL AAAIQDALIC VEMPIFAVAH WYAFSWHDFA DNSILSARMP 300
  301 LRHAFKDAFG IRDLIEDSKL TFRGDTYGYR VFDSGDKVMA HEDSKSRLAR LKEGMRYERG 360
  361 GKGKYWLPKP GEINSTTPLL RGNGESSDNR PDQINENTHG TFEEPEVDPD EDRLYEQARQ 420
  421 LEYGDWNYPV ITASEPLRER YRSPGSFGGR SAYNSPSVRS PAAEYPPNNK GKQRSSAHTP 480
  481 ARTPRVEPQA ESVVPIKKKK KPKKVVKHDE PDPNKLGLNK GPPAPVETVQ VGGHDGQASP 540
  541 GNNESRTLND GEDQSEHQTT SNYESHHGID EEEFRNVWGR DEESR

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.96
Transmembrane Helix	18	42	0.89
Cytoplasmic	43	54	0.92
Transmembrane Helix	55	75	0.86
Non-Cytoplasmic	76	88	0.71
Transmembrane Helix	89	108	0.82
Cytoplasmic	109	152	0.90
Transmembrane Helix	153	172	0.89
Non-Cytoplasmic	173	187	0.85
Transmembrane Helix	188	208	0.95
Cytoplasmic	209	222	0.92
Transmembrane Helix	223	248	0.83
Non-Cytoplasmic	249	262	0.92
Transmembrane Helix	263	284	0.63
Cytoplasmic	285	585	0.70