YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46136077, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRLASFAN PAAKSASASG RTMLQVRYLS EKAVAGSKGR AMPFSAVRAT APAASLPATL  60
   61 TIRDGPVFQG KAFGANANIS GEAVFTTSLV GYPESMTDPS YRGQILVFTQ PLIGNYGVPS 120
  121 AARDEFNLLK YFESPHVQCA GIVVSDVAVN YSHWTAVESL GEWCAREGVP AISGVDTRAI 180
  181 VTHLREQGSS LARISIGEEY DADEDEGFVD PGQINLVKRV TTKAPFVVES PGASLHVALI 240
  241 DCGVKENILR SLVSRGASVT VFPYDYPIHK VSQHFDGVFI SNGPGDPTHC QATVHNLARL 300
  301 METSNIPIMG ICLGHQLLAL AVGARTIKLK YGNRAHNIPA LDLTTGLCHI TSQNHGYAID 360
  361 ASTLPSDFKE YFVNLNDGSN EGMLHKTRPI FSTQFHPEAK GGPMDSSYLF DKYLQNVQLA 420
  421 KSNQVVFKDN RPTPLMLDIM SRERVGVEPT PLAASA

Type	Start	End	Confidence
Signal Peptide	1	18	0.87
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	456	0.96