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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42554194, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASILLPKRF RGETAPAEKT TPSWASKRLT PIAQFISRLA CSHPIHTVVL VAVLASTSYV  60
   61 GLLQESFFST DLPTVGKADW SSLVEGSRVL RAGPETAWNW KAIEQDSIQH AGADADHLAL 120
  121 LTLVFPDTHS AESSSTAPRS SHVPVPQNLS ITPLPSTKNS FTAYSQDSIL AYSLPYAEGP 180
  181 DVVQWANNAW TEFLDLLKNA ETLDIVIMFL GYIAMHLTFV SLFLSMRKLG SKFWLGICTL 240
  241 FSSVFAFLFG LIVTTKLGVP ISVILLSEGL PFLVVTIGFE KNIVLTRAVM SHAIEHRRQI 300
  301 QNSKSGKGSP ERSMQNVIQY AVQSAIKEKG FEIMRDYAIE IVILALGAAS GVQGGLQHFC 360
  361 FLAAWTLFFD FILLFTFYTA ILSIKLEINR IKRHVDMRMA LEDDGVSRRV AENVAKSDGD 420
  421 WTRVKGDSSL FGRKSSSVPT FKVLMILGFI FVNIVNICSI PFRNPRSLST IRTWASSLGG 480
  481 VVAPLSVDPF KVASNGLDAI LAAAKSNNRP TLVTVLTPIK YELEYPSIHY ALGSAINGNN 540
  541 AEYTDAFHHH FQGYGVGGRM VGGILKSLED PVLSKWIVIA LALSVALNGY LFNVARWGIK 600
  601 DPNVPEHNID RNELARAQQF NDTGSATLPL GEYVPPTPMR TEPSTPAITD DEAEGLQMTK 660
  661 ARSDKLPNRP NEELEKLLAE KRVKEMSDEE LVSLSMRGKI PGYALEKTLG DFTRAVKIRR 720
  721 SIIARNRATS DLTHSLERSK LPFEKYNWER VFGACCENVI GYMPLPVGVA GPLVIDGQSY 780
  781 FIPMATTEGV LVASASRGCK AINAGGGAVT VLTADGMTRG PCVAFETLER AGAAKLWLDS 840
  841 EAGSDIMKKA FNSTSRFARL QSMKTALAGT NLYIRFKTTT GDAMGMNMIS KGVEHALSVM 900
  901 SNEAGFDDMQ IVSVSGNYCT DKKAAALNWI DGRGKGVVAE AIIPGDVVRS VLKSDVDALV 960
  961 ELNISKNLIG SAMAGSVGGF NAHAANIVAA IFLATGQDPA QVVESANCIT IMKNLRGALQ1020
 1021 ISVSMPSLEV GTLGGGTILE PQSAMLDLLG VRGSHPTNPG DNSRRLARII GASVLAGELS1080
 1081 LCSALAAGHL VRAHMQHNRS AAPSRSTTPA PMTPVRSFDT KVRCQPNNKD IRNILLTQHP1140
 1141 SKPTITYSKR VIKSTIHLNP LILALFDNSV QTRDVQLGDQ VSTRGTLDAV GGPQGGGVAA1200
 1201 GGVARRVVGS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle