YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42554151, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPADNDSL LAKHYIDYVY APGLLLIVGT LIVKKEWTPY AALVAIAFGI YNFLAFQVKK  60
   61 TLKPDVFQDF ELEEKTIVSH NVAIYRFKLP SPKHILGLPI GQHISIGAPC PQPDGSVKEI 120
  121 VRSYTPISGD HQPGHVDLLI KSYPQGNISK HMASLVVGQT IKVRGPKGAF VYTPNMVRHF 180
  181 GMIAGGTGIT PMLQVIRAIV RGRAAGDKTE VDLIFANVSP QDILLKEDLD ALAAQDAGIR 240
  241 IHYVLDKPPE GWTGGVGYVT ADMINKYLPK PADDVKILLC GPPPMISGLK KATESLGFKK 300
  301 ARPVSKLVDQ VFAF

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.42
Transmembrane Helix	14	33	0.56
Cytoplasmic	34	36	0.34
Transmembrane Helix	37	58	0.66
Non-Cytoplasmic	59	314	0.54