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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42554088, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSASRRSYN PGRRMGSSRD LGRARAASRA QPIVVEHDEA RSFALRSAYL HYLLQPKAKR  60
   61 KQYVAAPKQP VRTHTSVGAL VQEFTSGSSS SFKLPHNFTS ALLERCGGVL RGSERLPGYN 120
  121 DPVVKRSFAE AYTTFSERNF RKTIDKERKL EPLILMFYTS TTKAAQKGAA PDDDSWKLIP 180
  181 DRHLALFVRL IATILRDQGH DRDKTELMSK LSILEKKLLT NDQNLVGGGA SGAGTTIEVV 240
  241 VPLSYDVKDM PLVQQVVKIF GLSLSEAQAE INENKGVWTE EAALKDLKSY QHRLNSDMPG 300
  301 ALGSNDFDLD DAFLEWKKAE SPHLSQMMLD ILTAKPELAK TSSGGVDKGF SSRPQSTYSN 360
  361 PGFDSSMGFD PSINLASLDI GDSGIRAVEE NLYTFVPQDP RAFFKYILKH AMTFDQINSD 420
  421 PDHDYQPLSK QSMDLLTELC VRWRVPQFSR LITLLEVASR NYLDRELLPE ELDAVFDFIK 480
  481 TPLPEVKKPP HVSNYCTPLS EIDPSRWTVH DFAVYQHTLQ TLYETLLRDL YDRMEQCYDT 540
  541 KPPQIGVVQY ILDNHIFSDP CFSPKPEAAE EFAEHLSQRL HEQAQRMYGQ YMEKEISADR 600
  601 NEWDFANVVK LGKTVIKLCE RINKRYAKNP EIMGVNPFQI LVEEVFPRFE EDAHAIIESI 660
  661 LETAQEIGTE LDIQDGFELY RELVAIRRIH NDSLPDRPFA FNIENLLVDF VWRWVRAAEN 720
  721 RVEDYVEQAV KQDQFQVRTE NPEDIPRDAE RHSVSIIDMF MLFNQTLDTI FNLNWGNDEH 780
  781 HARFMTSLSK AFAAGIGKYC ELVDQKFVKE MDRPSAEEMA AQNQTTQEKW MRYAKDAWNN 840
  841 KDRVEPFQFY SESFVKLNNI EYAMQELDKL ERAMDPDACA LLLEKLDGPK KKARRPNKYT 900
  901 FTIKVVEAED LKACDTNGYS DPYVVFGDEY QKRLHKTRII HRSLNPRWDE TFDITVQGPV 960
  961 NMIATIWDYD TFGDHDYVGR TSLKLDPVHF SDYLPREFWL DLDSQGRLLI RVSMEGERDD1020
 1021 IQFHFGKAFR HLKRTERDMV RKVTDKLTSQ INHTLSLETL RHLLGTGGIG ASVTSLWKKR1080
 1081 ASTMPTVTPV QIEAALAPLF AYFDENFAIM KQTLTKATMD AVMARLWKEV LMVIENLLVP1140
 1141 PLSEKPSQQR PLSRKELDIV YHWLDLLFQF FNARDESGEQ LGVPAETLKS PKWHELASLN1200
 1201 FFYFEDTNSL IRESERMAAA TTERARLALQ HQNSQSNRLS APAALGASLG GAGSFASMGT1260
 1261 IRRGKSIMMS RNLGTMRKAK EAKRREAQAD PSDDMILRIL RMRPEAAPYL RDRHRQKERQ1320
 1321 TATAAAALIV KNSVTQGWNS SAGPAFSGNF GRNNLPRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle