YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46127165, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.61
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.61
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	65	0.95
Transmembrane Helix	66	88	0.93
Cytoplasmic	89	96	0.81
Transmembrane Helix	97	117	0.93
Non-Cytoplasmic	118	134	0.92
Transmembrane Helix	135	157	0.92
Cytoplasmic	158	275	0.98
Transmembrane Helix	276	296	0.91
Non-Cytoplasmic	297	311	0.80
Transmembrane Helix	312	335	0.78
Cytoplasmic	336	352	0.79
Transmembrane Helix	353	369	0.87
Non-Cytoplasmic	370	385	0.75
Transmembrane Helix	386	405	0.93
Cytoplasmic	406	442	0.95
Transmembrane Helix	443	462	0.91
Non-Cytoplasmic	463	474	0.80
Transmembrane Helix	475	495	0.89
Cytoplasmic	496	509	0.83
Transmembrane Helix	510	528	0.93
Non-Cytoplasmic	529	542	0.85
Transmembrane Helix	543	565	0.91
Cytoplasmic	566	579	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYKKTASRV SNLLFLALLP IVFAHGDSQD MGKMNMGIDH DSNTTQSPKH QDYPNTYFAH  60
   61 FEHSGVIYAH ISLMVISWVF ILPIAVMFSL TRSRFTLPAQ LVFLASNTVG VFLGVVYNNN 120
  121 TPDLYPGNAH HKIGWTATWV ICAQVLVSVV GYIAGAFRSD ESSRETRYLL PIPSPEAELP 180
  181 LYSGYHDDSP CRTSDDTGRG TEPNSPSLQS DSVSTLDGMG SPPQHPSKEY EDDQDLEELS 240
  241 LSSPAPQGTL ARHGSKLATS RVWKHLDIGR KVIDRIILPF GSIVLATGIV TFSRFFEGDG 300
  301 IFNGLAHWVK GGVFFWLGIF TLGRWSGSFG ELGWAWNVHP KKSLQGWRPS AELVESFLIF 360
  361 FYGSTNIFME HLGGWGGDWT AQDMEHISIT ILFLGGGLCG MLIESTRIRN LLNMTVQDIE 420
  421 PMNPHAVEDA NEIKAPDTYE LSLNPIPALV IMLLGLMMSS HTQHTMMSSM VHKQWGNLLI 480
  481 GASFARGLTY ILMFIKPPTS VLPSRPPTEL LTAFGLISGG IIFMASSTDT VDGMIHYGLD 540
  541 AMFMYTVTMG LVGLLMAWIV IVLALKGWAM RIERRCIAG