YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42553729, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAPWLGSFA HKHTLYEPST LMHLLIASAL SLRRDPRILK LPPYLSFLCI AVGVIWLFLL  60
   61 PLNEYSRRTY ISENALLPGQ VHTYFGGSEQ NIFRAYRHEV DDVVNKSNYE VNDRLDKILT 120
  121 GVGLKVGRQN YTYNSAGHEY SGQNLYAILQ APRGDATEAI VLVAAWKNVE EQLNRNGVSL 180
  181 ALTLARYFKR WSLWSKDIIL VFPPDSKTGT QAWVDAYHDA HNPDLVAPLP LKSGALQGAL 240
  241 AIDYPQEQSF KSVYIIYDGP NGQLPNLDLI NSIVNIAGGQ MGISTSIQKM TEHTGTYPDR 300
  301 LQTMLRGMLN QGLGYSAGAH SNFIPYHVDA VTLQPYGEGW HDEMAMGRVI EGSFRSLNNL 360
  361 LEHLHQSFFF YLLMQTDRFV SIGTYLPSAM LIAANFTIMA ISLWVKSGQT PATEKSKEKD 420
  421 SATSVDAIQA GRDLFVPLGV VAVCQGLAAV PLYTFNHLPA SLLSPAFAGF SVVSAILPFA 480
  481 ISRLLTLFTK PTIQHFQLTK SFSLLVLGMC LSTLATLNFS LAFLVGVLSS PLSFVQPVKN 540
  541 PALRWSLAGL LNIVAPPTVV YAAAQLWHIS IADLLKEASF GWNVWGMYTP VVVWCLWWPA 600
  601 WLVGMVNVFG EVAA

Type	Start	End	Confidence
Cytoplasmic	1	40	0.59
Transmembrane Helix	41	60	0.94
Non-Cytoplasmic	61	381	0.96
Transmembrane Helix	382	405	0.87
Cytoplasmic	406	433	0.93
Transmembrane Helix	434	455	0.90
Non-Cytoplasmic	456	462	0.82
Transmembrane Helix	463	485	0.88
Cytoplasmic	486	501	0.89
Transmembrane Helix	502	525	0.91
Non-Cytoplasmic	526	544	0.84
Transmembrane Helix	545	569	0.82
Cytoplasmic	570	580	0.85
Transmembrane Helix	581	601	0.91
Non-Cytoplasmic	602	614	0.86