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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46135989, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERDRQSPPI TGFHSNGSQT TAESPVVGDP SLNPSGLDVT LDHQPRLHPL SSQGRYQDQD  60
   61 RYQDQDQDND QDQVHLTRPS FGSRRSSTYS IMQIDEIISD DRINMETYGV QELRDGFFDA 120
  121 LFLTPKPLDP DLVAEIAKAT LPKAFDKSHP LSAKHFLPRQ LHELISVAHR VATTRAGIEL 180
  181 IKSFLAFFIV YTLCLVQPVH NWLGRYDYIM AVSVIINHPG RSFGSQLDGA VLTIIGTAVG 240
  241 LGWGAVGLLL SVSTSDAREG YGWILAAFSI VLFASIAFLR AFLIRLYQPT LCAGIALTFT 300
  301 TLAETQSGEI KWQKLWSYAI PWALGQAVAL AVNCLVFPDA GNHSLAIALD KSFKTMQESL 360
  361 VIPRPKDIRA KRRLAKAFME VSLAYRDMRI DLTITRFRPM DVRELRNAVQ GVVRALLSMR 420
  421 TDTDLFEELD SPVGITVADG LGDEIPYEDS GRKIAQALSS PTKEVMACMA EAVSRCHAAL 480
  481 MDLTGWRKEI GPSADISSDI VPIQLRMKEA LEAFDAAEAR LLASNDRPDT YEEHGQAVEL 540
  541 FVFARHARET AATVVQLMTH VHDMRSHSNH TRINLPTYPP AKALYRTNAQ VRHDRGGVTA 600
  601 GKKKLRYRVW LVLRRLQDIE SKYALKVALL ILVLALPGWL GTETGWWNAH EAWWAACLGW 660
  661 ITMHPRVGGN VQDFFTRASI AILGAVWSGA AHAASRGNPY VLAVFSAIYM IPMMYRFTQS 720
  721 KHPRSGLIGC LSFTVISLSL RNHSADASVT LLGVHKGVAF LVGTIAPIIV NWILWPFVAR 780
  781 HELRGALSSM IYYMSIMYRN VVANYVYFDE GKDPTPEDIR RSEMLESRMR EGFVRIRQLL 840
  841 VMTRHEIRLR GPFDPVPYSC LAASCERFFE YLIAVRQSAL FYNPNYIRDN PVAAEMLFTY 900
  901 RRDAVAAILS NLYTLSGALK HQKKVPRYLP SAAAARKKLL HRTVEVAKEM EEKAEYRELE 960
  961 RQKTWSDIYS YSYNESLTGC VAQLEELEQF TKLIMGEKR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle