YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42553451, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLKEEFQTR NFSIYGQWLG IISMIICLAV GIANIFSFHV VRIIFCAFAI ASSFVILFIE  60
   61 VPLLLRICPT SSKFDEIIRK VSTNYMRAGA YGVMSALQFI SIVTGSSSLI AAAVFLLLTA 120
  121 LCYLLAGVKG QAFVGSKTLG GQGVAQMIV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.94
Transmembrane Helix	14	36	0.90
Non-Cytoplasmic	37	42	0.70
Transmembrane Helix	43	65	0.91
Cytoplasmic	66	82	0.91
Transmembrane Helix	83	102	0.86
Non-Cytoplasmic	103	108	0.67
Transmembrane Helix	109	128	0.91
Cytoplasmic	129	149	0.84