YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46136275, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPAPGALA RGTRFVRNVL TGQHALSKLI PVALWLADAV GTSLIIWKVP YTEIDWEAYM  60
   61 QQVSQFISGE RDYTKIEGGT GPLVYPAAHV YTFTGLYHIT NEGENIFLAQ QIFGVLYMAT 120
  121 LAVVMLCYWK AKVPPYMFVF LIASKRLHSL FVLRCFNDCF AVFFLWLSIY FFQRRNWTFG 180
  181 SLAYTWGLGI KMSLLLVLPA IGVILLLGRG FWPGLRLAWL MAQVQFAIGI PFIMKNSRGY 240
  241 AARAFELSRE FKFEWTVNWR MLGEEVFLSK SFAIFLLACH VTALLVFISQ RWLQPTGRPL 300
  301 SAMIPSFLQL KSPFTLQEQL RISHYVTPEY VMTTMLSANV IGLLFARSLH YQFYAYLAWA 360
  361 SPYLIWRATE DPFIVLLIWA AQEWAWNVFP STDLSSRVTV GAMLATVVLA YRGTARLAVP 420
  421 PSQARKIEAK NK

Type	Start	End	Confidence
Cytoplasmic	1	28	0.81
Transmembrane Helix	29	47	0.67
Non-Cytoplasmic	48	106	0.76
Transmembrane Helix	107	129	0.92
Cytoplasmic	130	149	0.91
Transmembrane Helix	150	172	0.92
Non-Cytoplasmic	173	187	0.83
Transmembrane Helix	188	208	0.91
Cytoplasmic	209	216	0.66
Transmembrane Helix	217	234	0.64
Non-Cytoplasmic	235	266	0.60
Transmembrane Helix	267	289	0.88
Cytoplasmic	290	329	0.56
Transmembrane Helix	330	351	0.77
Non-Cytoplasmic	352	393	0.56
Transmembrane Helix	394	415	0.82
Cytoplasmic	416	432	0.87