YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42553314, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFALSEESKE RIAKLIDVSR VAIHYYRSGY LPLILYLGYT RSEPRPSVIR DVGFMRQKAS  60
   61 FFFMPDFNNA GLSPATIESI AGLSAGTVST LTVHPLDVVK TRMQIYRSTA PGAVRPTTVS 120
  121 ILRALTSTPH PIASLYRGLT PNLVGNASSW ASFFFFKSRF ENTIAAWQGR PDGRPTPGDY 180
  181 FVASALAGAS TTTLTNPIWV LKVRMVSSDR GSRGAYPSML AGARSILQTE GIRGFYRGLG 240
  241 ISLVGVSHGA VQFAVYDPMK RLYHARRREK YGLERDHMTT EATIGLSSLA KFVAGAVTYP 300
  301 YQVLRSRLQN YEADKRFGRG IRGAVVRIWT EDGLRGFYRG LVPGVVRVMP ATWVTFLVYE 360
  361 NVKYYIPYWV

Type	Start	End	Confidence
Non-Cytoplasmic	1	234	0.51
Transmembrane Helix	235	256	0.52
Cytoplasmic	257	336	0.49
Transmembrane Helix	337	357	0.30
Non-Cytoplasmic	358	370	0.66