YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42553270, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPYLKSIE DCGEYARAVE PYIPQLYALP RQFLDNVASP DGLRQLYVDT NPLISGFAIS  60
   61 VALTVPFLVV SEINRNYSQV DRMWSILPNL YVVHLSIWAR LAGVSSSRID LVSLATTLWS 120
  121 CRLTYNYWRK GGYEKGSEDY RWAILQKYVP RPVWFIFNVT FISFYQSVLL FSFSCVPAYA 180
  181 ILLSTKFEEN VTPADILFFL TMVGLIYSEW VSDGQQWDFH AAKHKYQAEA KVPREFSYTQ 240
  241 ADLDRGFNTS GLWAYSRHPN FAAEQLVWFV LYQWSCYATK NLYSYTLAGS AALIMLFQGS 300
  301 TWLTELITVG KYSEYPKYQK QVGMFLPKSL QPYKTPPPKV IRTSDLAKNE SKKEA

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.53
Transmembrane Helix	52	71	0.76
Cytoplasmic	72	83	0.57
Transmembrane Helix	84	104	0.61
Non-Cytoplasmic	105	161	0.66
Transmembrane Helix	162	183	0.87
Cytoplasmic	184	190	0.67
Transmembrane Helix	191	211	0.76
Non-Cytoplasmic	212	281	0.70
Transmembrane Helix	282	303	0.63
Cytoplasmic	304	355	0.60