YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46124473, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSRRAAKA APEEDIAAMD STPRTTTTPR TSPFLPTPLE RAGLVIFPAM LIFGTIFSII  60
   61 SPQTRAAPYD HVTQSHLQDP SFSPSYFARK SNLFNVLFVK RGWAWITVAF FGFVFSHPST 120
  121 ANLERRARAI FRWFAVTSMW FLVTQWCFGP ALIDRGFRWT GGRCELARRE VEFGVDSVAD 180
  181 KVTAVACKAA GGKWKGGHDI SGHVFLLTLG TAFLMQEVGW AVLRWSGKRN EERCVVMSDG 240
  241 ALKSANVEAD HAIGEGAGEP ALGLGGKFAV GVMGLSSWML LMTAIYFHTW FEKPFTLYRW 300
  301 SAWHIIETWH P

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	61	0.93
Non-Cytoplasmic	62	101	0.92
Transmembrane Helix	102	121	0.92
Cytoplasmic	122	129	0.89
Transmembrane Helix	130	152	0.90
Non-Cytoplasmic	153	201	0.96
Transmembrane Helix	202	223	0.89
Cytoplasmic	224	267	0.92
Transmembrane Helix	268	290	0.88
Non-Cytoplasmic	291	311	0.92