YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46125939, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATPATFYE QLPLPTIDRP FGIHLWPIFD KAFTAVVGYS ANDFKFVPFE TPMSTLKSTS  60
   61 IFIVIYYCII FGGREWMRNR EPFKLKGLFL IHNLYLTLIS GTLLALFIEQ LLPTVVRGGI 120
  121 FHAICDAEGG WTQPLVVLYY LNYLTKYLEL LDTVFLFLKK KPLTFLHCYH HGATAFLCYT 180
  181 QLIGSTSVSW VPIVLNLLVH VVMYWYYFQS ARGVRVWWKE WVTRLQIIQF VIDLGFIYFA 240
  241 SYTYFTSTYF QWMPNAGKCS GEEFAAFSGI ITISSYLVLF ISFYFATYKK QGKAPTGRQS 300
  301 LRRMSQAPLP DPHLVQTTPV KKSNGASTTG AKTNSASARS RKA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.57
Transmembrane Helix	21	41	0.44
Non-Cytoplasmic	42	52	0.80
Transmembrane Helix	53	73	0.81
Cytoplasmic	74	88	0.82
Transmembrane Helix	89	108	0.93
Non-Cytoplasmic	109	187	0.61
Transmembrane Helix	188	208	0.92
Cytoplasmic	209	224	0.92
Transmembrane Helix	225	246	0.89
Non-Cytoplasmic	247	263	0.94
Transmembrane Helix	264	288	0.89
Cytoplasmic	289	343	0.99