YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46123069, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPSNPAMVN GLNGSHANGN GNGHNHISDS GSETSGESSN GSGRRRMKLN RKMSSPMAPP  60
   61 FMVSAPGKVI VFGEHSVVHG KAAIAAAISL RSYLHVTTLS KSKRTVSLRF ADIGLVHTWN 120
  121 IEDLPWEAFQ QPSKKKSYYS LVTELDPDLV AAIQPHIEVV SPNHPEEIRR VHHSSVSAFL 180
  181 YLFLSLGSPS FPPCLYTLRS TIPIGAGLGS SASVSVCLAS ALLLQLRTLS GPHPDQPADE 240
  241 ARLQVERINR WAFVSEMCIH GNPSGVDNTV ATQGKAVVFQ RTDYSKPPNV RPLWDFPELP 300
  301 LLLVDTRQAK STAHEVAKVA KLKQTHPKLV NSILDAMDKV TDAASELIEE TSFDNGSVED 360
  361 LSKVGELMTI NHGLLVSLGV SHPRLERVRE LVDHEGIGWT KLTGAGGGGC SITLLRPDVP 420
  421 AEKLQKLEER LETENYAKFE TTLGGDGIGV LWPAVLKNGT EEDEEGGMEI DLEKFLEAEG 480
  481 TEGVEKLVGV HGDTGEREGW KFWRVESQ

Type	Start	End	Confidence
Cytoplasmic	1	52	0.72
Transmembrane Helix	53	72	0.38
Non-Cytoplasmic	73	78	0.58
Transmembrane Helix	79	95	0.38
Cytoplasmic	96	176	0.67
Transmembrane Helix	177	196	0.71
Non-Cytoplasmic	197	203	0.51
Transmembrane Helix	204	224	0.83
Cytoplasmic	225	508	0.55