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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46121839, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDPSNAAQ MAGDVAETVA HALSFSSSPP SAMSTMPAVT VHEPYTWFGL FGWLILSILH  60
   61 ITSTILYWVI RIATINVPSF LFHLFSTSWT VTMNATTLMF IMAAVVSAVS WVVRYRILNM 120
  121 YSRLPPEPQR KEPEIDLFPD THEGGSKSGL ANYLDEFLSA IKIFGYLERP VFHELTRSMQ 180
  181 TRKLIAGETI NLEEEKGFCI VVDGLVEIFV KSNRSPRAAA ASRGHLDLDS SDEDDDAPGQ 240
  241 QTYQLLTEVR NGAPMSSLFS IMSLFTEDVG LRPNEENEEP PLHPAKSSGL RHPTFEKQNL 300
  301 SMPGTPHNHH KFEADEKKPE GLGVSGMETE HTAIPPISLD GSTPPPRPTR PPMPSRATSG 360
  361 SAHPDIIARA TVDTTIAIIP ASAFRRLIKI YPKATAHIVH VILSRFQRVT LAQAFNYLGL 420
  421 TSEVLQTEKS MIKYTMCQLP NILRGDALER LKEKFKRERE RSEEEDDTKG IALHNSASTH 480
  481 RRRSSTGLRK EAMLQSMTKL RGASVVTSTI TPPRERASPH TPSPGDLLSN TQLPGRGASR 540
  541 VSQADQRAVS GASMRRQGAN PKDDRFFNDP FDSRRLGRMT LDPRETVDED NLFRASILEC 600
  601 MFKSLGLDTN GSVSREPESM EGSPKLVSVD HRRSRFGNQS NAFGFMPPYD GSVDGDTESV 660
  661 TSNGTALHAP VSAHNLANDM KDEVEIVFFP KGSVLVEQGE RNPGLYYVVD GFLDIGTSSE 720
  721 GDAHNILKSS GFGKSQQDPS SPDPSDMGSF PTLAKTETAR DQAEAETQQS ASKKSRRSIA 780
  781 LVKPGGLAGY IGSVSSYRSF IDVVAKTDVY VGFLPRASLE RIVDRYPIVL LTMAKRLTNI 840
  841 LPRLILHIDF ALEWVQVNAG QVLFHEADES EAIYIVLNGR LRMVQERKGG SGGVTALAEY 900
  901 GQGDSVGELE VLTETARPGT LHAIRDTELV KFPRTLFNSL AQEHPNITIK ISKIIASRMR 960
  961 AIVDDTSKFS SKDASTSPKT LMRKSNMNLR TVAILPVTAG VPVVEFGNRL MNALAQVGPA1020
 1021 NGATSLNQAA ILNHLGKHAF NKMGKLRLSQ YLADLEEKYG LVVYVADTNV NSPWTQTCIT1080
 1081 QADSILLVGL AEGSPAIGEY ERFMLGTKST ARKVLVLLHA ERYSRPGLTR AWLQNRMWIN1140
 1141 GGHCHIQMAF RTNQMPVHAP KKLGQALKER VQVLQAEIQK YTSRKVHHTP YYSPDSPFKG1200
 1201 DFHRLARRLC GKSIGLVLGG GGARGITQIG IIRAMEEAGI PIDLVGGTSI GAFVGALYAR1260
 1261 HADVVPMFGF AKKFAGRMAS LWRFALDLTY PSASYTTGHE FNRGIFKALG DTQMEDFWLE1320
 1321 YYCNTTNISK SRAEFHTSGY AWRYIRASMS LAGLLPPLCD EGSMLLDGGY IDNLTVSHMK1380
 1381 GLGVDIIFAI DVGALDDDTP QTYGDSLSGA WAFVNRWNPF SPHPNPPTLA EIQGRLAYVS1440
 1441 SVDALERAKT MAGCIYMRPP IDDYGTLDFH KFDELYQLGY KYGQEFFNKM KEQGVLPLVE1500
 1501 ETEAKKALRR TMAPRRASI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle