YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46121827, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRFFVLFP MVLSMVAFIL SMLCLFAGHK EGFMEDYSVA RLNTSMIGHN VLDTDSSAST  60
   61 NDNKDDDGFF GAVKGKWNEV KDDIKGKIND VTGDIADELA DTIGISEWYS IHVMATCDGQ 120
  121 YKPNATSPGA GFNVTNCTNS APEKRFNLTE MLDKQLSVGP FDLSLADINW PDDIQDSLDL 180
  181 LNTALFATFI LYVIAVGLSG LAMLTSLAAF FLFSRRGVNA VNLVIAGLAA LVLLISSILV 240
  241 TVAGKKGVNK LNDVGDDVGI SASIGKKFLG LTWAAAALMI AAAIYWFVHL CLMRRERKRE 300
  301 WKPLHGVRND LVETGEVYTR NYAVDGIMKP CPKKQEDCIL MLAPEIPKYS GSIAYVTSNR 360
  361 RYNH

Type	Start	End	Confidence
Signal Peptide	1	27	0.70
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	187	0.97
Transmembrane Helix	188	212	0.89
Cytoplasmic	213	219	0.84
Transmembrane Helix	220	243	0.89
Non-Cytoplasmic	244	268	0.96
Transmembrane Helix	269	292	0.89
Cytoplasmic	293	364	0.99