YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42552490, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKITIITCK YSQITRRCLS SPIYARLYSL YTGILFLDSK RQITNEIILY EASSTSMCLD  60
   61 ITRKIMSEWR QAFMQGSCVK LRRAPGTSLQ YWQDPRYFQS ICLVLDRWVS RINTMNVDVD 120
  121 CRVGLRASYL SSQNYMFRLK RAINDLLKRR RTSCRRVRGV AMGSQCCNAL LLMNVVSFLD 180
  181 AKYYALATPT QESPISARAA SFIPGGKKAV SAGGNAVPFW KDHLGWWYDW TPAPTPVAGV 240
  241 VGVSMLWGSG QNGPQDSKRF SEFSNLNETP TYLLEFNEPD YSGQDTSANF GVSKGVELWN 300
  301 SLIAPKGQQG ALLCSPAMCM QKDEKWLKEF STASLSKPWD FTAIHIYKPD MTGVQADIDY 360
  361 YWNTYGKPIW VTEFGCVYDQ NNFTPCSDQG QINKWISDIV DLFEKNEHVA AYAYTDGGGL 420
  421 GQAWLPTTDG GKKLSQSGQT YLSAISKYH

Type	Start	End	Confidence
Cytoplasmic	1	156	0.53
Transmembrane Helix	157	176	0.46
Non-Cytoplasmic	177	449	0.62