YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42552285, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDGPPLIR PVPRRPFDLN LTTPTPPSEN SSPPTPAPAQ DANIARFLQP TPEPGNSTLS  60
   61 RPQSFMNLTS STLFGIYSPT TSSSSRDRVF ADRDELDTPW GTGAQTPIKR PGLDDATFDF 120
  121 MKDRSHQIRR RSSIRSQAPP MPVNTSPSAG ALVMRGLLLF VLGVGYGVLV TSRFNSDSDS 180
  181 QAGSTYNWAH LSFWGLAGVA LGALFPWFDR VWEDSFGEKE DEAVAENAPA KDDDSGTDWA 240
  241 IAIRAIGAFV GIVFAIRKVA WASTLQVSLT LAMVNPLLWW LIDRSKPGFF LSTAVGLAGS 300
  301 MILLGINPDM MPAPAHAPFR QLVNATTPSQ DEVVPILGGF AHQETLETGM WMLSVLFCSC 360
  361 VCFGNIGRRL TLGPSATAKG RWAGVR

Type	Start	End	Confidence
Cytoplasmic	1	150	0.66
Transmembrane Helix	151	170	0.92
Non-Cytoplasmic	171	187	0.57
Transmembrane Helix	188	208	0.92
Cytoplasmic	209	239	0.59
Transmembrane Helix	240	256	0.76
Non-Cytoplasmic	257	261	0.50
Transmembrane Helix	262	281	0.72
Cytoplasmic	282	287	0.84
Transmembrane Helix	288	307	0.93
Non-Cytoplasmic	308	347	0.93
Transmembrane Helix	348	367	0.93
Cytoplasmic	368	386	0.87