YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42552280, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPPTANLNL DVEAISGICG SISIACWVVV FSPQIIQNFQ RGSADALSIQ FIIVWLLGDV  60
   61 FNILGAVLQG VLPTMIILAI YYTIADIVLL AQCFYYRGFT WRDAPTPAPK PTTPAPGEPN 120
  121 ERTGLIAHDE RRGSDWSGLS PAVPHIAEDA APRTPTVLQT IVWNTIIVVM VIAAGVVGWF 180
  181 LGQKASHGEN DGDHDERGED SLHFSLSGQI FGYLCTVAYI ASRLPQLILN WRRKTTDGLS 240
  241 MLFFLFACLG NITYVLSIFA YDPKCKHDEC RPGEARHIYG KYILVNLSWL AGSLVTFFLD 300
  301 LGVFAQYFMY SKPETVATPT RRRVNDNVVE EDEYDNESGD EDSWDQRPLL QRGDSVYHP

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.79
Transmembrane Helix	14	31	0.94
Cytoplasmic	32	46	0.71
Transmembrane Helix	47	68	0.86
Non-Cytoplasmic	69	76	0.59
Transmembrane Helix	77	96	0.90
Cytoplasmic	97	160	0.92
Transmembrane Helix	161	182	0.94
Non-Cytoplasmic	183	201	0.91
Transmembrane Helix	202	222	0.81
Cytoplasmic	223	237	0.71
Transmembrane Helix	238	258	0.89
Non-Cytoplasmic	259	286	0.77
Transmembrane Helix	287	308	0.83
Cytoplasmic	309	359	0.85