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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46138455, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSSRKENDD PPVYPAVPNS LRSESFEMTE MRKVQEARAD TSPNVTPYLS LRSRLSQIWI  60
   61 NRWTVLLILV LIRVMILIVD LNKNVGDAKI KALSACTKVE DVGSAMASMP HYLSRGVNEL 120
  121 AASGIEKSVD AMVYMLDLVL VGVKNMIIFY INFLTATYVC LITAMVHGSL DVVADVTEGA 180
  181 TKKFNSLIDK ATSKIESISK ELEDGINDIT DGIERSVIGR LVPDIPKVDF SAPIKELKDF 240
  241 DLKSEDFVKD VRQLDDDLPD FKEVQNLTEQ AISIPFDFVR KTLNETYGNY KFDRNAFPLA 300
  301 QKQKLSFCSK NDALNNFFNN LFELIAKART IFIAVLIILA LAVIIPMAWL EIRRWRRQQQ 360
  361 HARLIAQNAY DPMDIVYIAS RPMTATFGIK VASRFKGKRQ ILVRWLFAYA TSVPALFILS 420
  421 LAIAGFFSCF CQWLLLRAIK NEVPALANQV GAFADDVVEN LESVSAGWAN DANGVITGFS 480
  481 DDINHDILGY VTNTTDAVND TLTTFLETMN DGLDTVFKGT ILLDPIKTVL YCVIGNKIEG 540
  541 VQKGLTWVHD HAEVNFPLFE NDTFSKGAKD SVDGDAELGS FLASPSSATT DEVTGAVKAV 600
  601 TDWLHNKLIQ DALISTGLVL LYVLVVLIGT VWTIVGMVTP DKGRAEGGMR FTGDNRPGFS 660
  661 PRVGHHDPAN PDGAASFPRF GSSSGEEDHY REATSGRDEK FMSGATGARA TQVDGHQRSS 720
  721 SYGYLDSASG GKH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle