YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46121209, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPPNPNLP LQERLMALAQ TLQFGWFVGH LTLILATIRY GFSWLRMNYY TGMAKFSYRT  60
   61 AFIAAAVTYG IVVYKTMRAR AKSGQRAAPT PLAMLADENI QYLAIAMSLV WLFCPQYPLA 120
  121 LIPYTIYSVF HVATYTRANL IPAVVAPRPA PEADGATPSR RTSVDHPIAN KIGAFVKEYY 180
  181 DASMAIVASL EIALWGRIFL SAILFQRRSW ILIVLYTAFL RARYTQSTHV QHSFSQLSAR 240
  241 VDSFVSAQGT PPAARSIWQS VKEGARQFHD ATALGNAGPA KKSS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	42	0.89
Non-Cytoplasmic	43	55	0.91
Transmembrane Helix	56	77	0.88
Cytoplasmic	78	99	0.91
Transmembrane Helix	100	121	0.81
Non-Cytoplasmic	122	181	0.87
Transmembrane Helix	182	201	0.78
Cytoplasmic	202	284	0.72