YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42551812, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSEPFPLL NTANDQLHQR HQATSSVSVS NTTATQDAIN NARKRRKSSA LGGEIRGDTG  60
   61 APAFASSRAS LDATSDGRKR LSKRRRARGL IARAKQTMIK HTWVLPAILL TLFLVGYAFN 120
  121 PTESNPIHNF IFLSYKLPQD DLSAPAQYGK GRWDLAFVSF YTIVLSFTRE FIMQELLSPL 180
  181 ARYYGLSRGK KARFMEQVYT AIYFGVLGPV GLWVMSHTPV WYFNTYGMYD GFPHLTNLAP 240
  241 VKFYYLFQAA YWSQQAIVLL LGMEKPRKDF KELVGHHIVT LGLIALSYRF HFTYIGLAVY 300
  301 TTHDISDFFL ATSKTLNYID SPLVGPYFGV FMMAWIYLRH YLNLKIIWSL FTEFETVGPF 360
  361 ELNWETQQYK CRIAQVITAS LLCALQALNL FWLFCIARIA WRFVSQNDLQ DDRSEDEDDG 420
  421 EIEDDEVASP SSKANGSTNG HANGHANGKT AADMKN

Type	Start	End	Confidence
Cytoplasmic	1	100	0.98
Transmembrane Helix	101	120	0.93
Non-Cytoplasmic	121	154	0.94
Transmembrane Helix	155	173	0.89
Cytoplasmic	174	197	0.87
Transmembrane Helix	198	220	0.88
Non-Cytoplasmic	221	242	0.87
Transmembrane Helix	243	263	0.87
Cytoplasmic	264	272	0.96
Transmembrane Helix	273	292	0.90
Non-Cytoplasmic	293	317	0.86
Transmembrane Helix	318	338	0.85
Cytoplasmic	339	375	0.84
Transmembrane Helix	376	401	0.74
Non-Cytoplasmic	402	456	0.79