YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42551697, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATAAGKN ASPFPDGTKD YVPLRAGAAK KDTNKPHISD TPMTWSNWPQ HINWLNTTLV  60
   61 VFVPLMGFIS AYWVPLQLKT ALWAVFYYVH TGLGITAGYH RMWSHSAYKG TTPLKIYLAA 120
  121 VGAGAVQGSI RWWSYGHRVH HRYTDTDKDP YSVRKGLMYS HMGWMVLKQN PKRQGRTDIT 180
  181 DLNEDAVVVW QHKNYIKCVL FMALAFPAIV AGLGWGDWWG GLVYAGILRV CFVQQATFCV 240
  241 NSLAHWLGDQ PFDDRNSPRD HVITALVTLG EGYHNFHHEF PSDYRNAIEW WQYDPTKWSI 300
  301 WLWKQLGLAY ELKEFRANEI EKGRVQQLQK KLDQKRATLD WGIPLEQLPV VDWDDFVAQS 360
  361 KAGKGLVAIA GVIHDVTDFI KDHPGGKALI NSAIGKDATA IFNGGVYLHS NAAHNLLSTM 420
  421 RVGVLRGGCE VEIWKRAQFE NKDITYMNDS AGQRIIRAGS QATKIVQPAA SADAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.43
Transmembrane Helix	52	74	0.91
Cytoplasmic	75	80	0.37
Transmembrane Helix	81	103	0.82
Non-Cytoplasmic	104	113	0.43
Transmembrane Helix	114	134	0.78
Cytoplasmic	135	197	0.61
Transmembrane Helix	198	219	0.86
Non-Cytoplasmic	220	224	0.45
Transmembrane Helix	225	247	0.57
Cytoplasmic	248	475	0.54