YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46138765, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEKSPTIVA NAKLDRYRRM LSSRNLAFLP PPSPRISRHS HTPTYVSTLL YSFDGTVHVP  60
   61 SPPKRNRNSS QSLSPSQGYG YQHQLHHHHP PPQQQPQQQQ QQDHLGAEHN GQTLRHNQRR 120
  121 HSHDDTDDHI LDPGKRQHNH PANGSSHYDT PNTFTISSPS EPITTERSSR RDKYLHSTIP 180
  181 NTFWPPGFNS LRRIVVGAIY CSALPPFSLT MSSRSKIPET PRVISPSPTP SERDASDYMG 240
  241 PVTRSAARRR TPTPQPLEED LDEDLPEPPE FRRARTRSRS PIGPNAVTRL TKRTSTAAKA 300
  301 GKISKDAIPE EDTSNGALNG NGNGKASTSN GHLAPPQPTT PIGWSWRDFS RSPSPLGLIP 360
  361 IHRHWRTFVH KHEVPRKVLH VSIGFFVIWL YVTGTQTTSV TPWLMSALIP ITTVDWLRHR 420
  421 YASFNRFYVK ALGALMRESE YSGWNGVIFY LLGAWIVLYG FPKDIGIMSV LLLSWCDTAA 480
  481 STFGRLWGRY TPRLRKGKSL AGSTAAFLVG VGTSYFFYGW LVPTMGPFPG DENFMFKGIL 540
  541 SLPKTICEAV GVSQEQTTIS GAVALGVMSI VSGFMASASE VVDIFGWDDN LTIPVLSGIS 600
  601 IWGFLKVFS

Type	Start	End	Confidence
Cytoplasmic	1	373	0.72
Transmembrane Helix	374	393	0.81
Non-Cytoplasmic	394	399	0.75
Transmembrane Helix	400	420	0.86
Cytoplasmic	421	440	0.93
Transmembrane Helix	441	459	0.95
Non-Cytoplasmic	460	466	0.72
Transmembrane Helix	467	488	0.91
Cytoplasmic	489	499	0.90
Transmembrane Helix	500	521	0.91
Non-Cytoplasmic	522	558	0.89
Transmembrane Helix	559	578	0.83
Cytoplasmic	579	585	0.62
Transmembrane Helix	586	605	0.70
Non-Cytoplasmic	606	609	0.45