YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46121571, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGLTLPTFT RAEVEEHNSE GSCYVTIGSK VYDITDFIED HPGGPEYVLE YAGRDIEKIL  60
   61 KDSDSHTHSD SAYEILDESL VGFLVPEKSV NGHANGTANG NGNAKLSNGD ANGTVHPRTG 120
  121 MSCEEDLSRE TDYNMDYKKN KFLDLNRPLF PQLWFGGFTK EFYLDQVHRP RHYKGGQSAP 180
  181 LFGNFLEPLS KTAWYIVPII WLPCIAFGTH VASQGFDNQL YTLGYWVFGV FFWTIIEYVL 240
  241 HRFLFHLDYY LPDNRVGITL HFVLHGIHHY LPMDRYRLVM PPALFALLAT PFWWIAHSIL 300
  301 CHNWYAAVAA YCGGVFGYVC YDLTHYFLHH QDLPLWYKDL KKYHLAHHFL DYELGFGVTS 360
  361 RFWDTIFGTE LIYDTKKTK

Type	Start	End	Confidence
Cytoplasmic	1	191	0.83
Transmembrane Helix	192	213	0.90
Non-Cytoplasmic	214	221	0.70
Transmembrane Helix	222	241	0.92
Cytoplasmic	242	277	0.62
Transmembrane Helix	278	297	0.91
Non-Cytoplasmic	298	303	0.55
Transmembrane Helix	304	328	0.78
Cytoplasmic	329	379	0.71