YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46121563, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDVFAVPV FLVVFRETLE TVIIVSVLLA FLKQTLDGPN GDVKVYKQLK RQVWLGTGIG  60
   61 FFICMVVAAA LIGVFYTVGS NSWEKHEYYY EGAFCLFASL IISVMGAALL RIGKMQSKWR 120
  121 VKLAKALESP IKTGNKGWFK QFVERYAMFV LPFVTVLREG IEAVVFVAGV SFSASAKCLI 180
  181 LNADCDSRGG ASTKLQFFLV LSTCLLYLVG AGLFSRSVWS FEMAKWNEYI GGEADEFGNG 240
  241 PGSYDIDQSV WHVNCCTSTD KIQNGWGIFN AILGWTNSAT YGSVISYNLY WICVMTGFIV 300
  301 MRFKETHGRY SFGKAKAPAN AVDDAESHAT SSPRNVSSEK TTTA

Type	Start	End	Confidence
Cytoplasmic	1	52	0.69
Transmembrane Helix	53	76	0.92
Non-Cytoplasmic	77	91	0.83
Transmembrane Helix	92	113	0.92
Cytoplasmic	114	196	0.89
Transmembrane Helix	197	216	0.94
Non-Cytoplasmic	217	278	0.91
Transmembrane Helix	279	301	0.82
Cytoplasmic	302	344	0.95