YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46121551, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPRTRRQAG KASNASSSES EPEVRSNGNG VAHRAADVSD DAPRENIFLF YPNIIGYARI  60
   61 VLAIASLYYM PLHPRTCSFL YSVSCLLDAL DGYAARIYEQ STRFGAVLDM VTDRCTTACL 120
  121 IVFLSSAFPR WAIVFQGLIA LDLASHYMHM YATLVVSGSN ASHKSIDESK NWLLRLYYTN 180
  181 KGVLFALCAL NELFFIALYL LCFSSPLVSP YLIKPIEIVG AELQAGAQVN TSILAQIFPD 240
  241 PFSPAALELA RANKMDSTVP WIIAGISFPF MFMKQLINCV QLYNASQGLA EIDLKTRREQ 300
  301 GLPRPKPKKA

Type	Start	End	Confidence
Cytoplasmic	1	48	0.80
Transmembrane Helix	49	70	0.60
Non-Cytoplasmic	71	76	0.43
Transmembrane Helix	77	95	0.37
Cytoplasmic	96	114	0.72
Transmembrane Helix	115	140	0.63
Non-Cytoplasmic	141	142	0.54
Transmembrane Helix	143	162	0.49
Cytoplasmic	163	181	0.51
Transmembrane Helix	182	203	0.89
Non-Cytoplasmic	204	310	0.52