YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42551365, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKDGYSWT ESQGLKSGVP CIGAISPPTN LKNNNTKYDV IVVGAGYCGL TAARDAAIAG  60
   61 LKVLLIEARD RIGGRSWSSN IEGYPYEMGG TWVFWGQAHV WREIQRYNMQ NELELSYDFS 120
  121 RGINKYLLVT PEGTQKFTHE EEDQLMQSGL QKLVNVDGQD GRETIVFPHI SKLDAIAEKY 180
  181 DRMSIADRIA EIKTDLTYNE RICLEAFVLL CSGGTLETTS FYEFLHWWAM SGYSYQGCIE 240
  241 YLVKYKFKGG QSSFAINFFK EALATGNLTY SFNTPVASIK NSPAGVEVTS RSGQTFRARK 300
  301 MISAIPLNVL NDVKFDPPLA TGKKAAADIG HVNQCIKVHA EVSDKDLRSM TSISYPHNKL 360
  361 AYGFGDGTTP AGNTHIVAFG GQNNHFHPEE NIQTTLDAFQ GFTPMKIERL VFHNWSKDEF 420
  421 AKGAWFFSRP GLLADHLGDM RASQGNIIFA CSDWALGWRS FIDGAIEEGT RAAMLTRIII 480
  481 QSSLHLFAPY YLRRNISLGK FYSNHLGDTK LDLACQILNL TPPATMATTT KPQKASPYLF 540
  541 VYNTLFALVR IALFVRTTYL WTQQGNGAVW DELNVTARWT ETFTVMEVLH AVAGLVRAAP 600
  601 ATTALQVAGR NTIIWAITRN YPEVGFREDA YSFMLMAWNA ADAVRYLYFT LQTGTGSVPA 660
  661 SLTWLRYNMF IVLYPVGILS EMKLVYEVIV PSQARNPIYQ YLLWFGLAIY VPAFYILFGH 720
  721 MLAQRAKLNR SMSKKQS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle