YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46123301, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPRRDAPP SLTATVNANA VTTTTATVLP TSNGHAKGDD APDAGLRSLD HYKRALPKWR  60
   61 YDLRQQLLPL IRWETPYLAW MQEKMRTPAL DSYFAITANL GTHTFFMIGL PICFWCGYAA 120
  121 FGKGLVHILA LGVFWTGFIK DFYSLPRPLS PPLHRITMSG SAALEYGFPS THSANAVSVA 180
  181 VYALLILRSP ENTLPPTTKF ALECLSYFYA ASIIFGRLYC GMHGFLDVII GSIMGAAISL 240
  241 LEFYYGPPLD EYMHSSSWIA PFVAALIILV LVRIHPEPAD DCPCYDDSVA FAGVLIGLEF 300
  301 GTWTYGKISI DPWETHAHGG GAVDITHLGL IANVARIVFG VLVVFLWRET MKPLLLGLLP 360
  361 HLFRIIEQVG MNMPRRFFTP ASKYKTVPAG SRIDTLFPSP SDFPRMVESI RNPTTRGRSV 420
  421 SIGPQSAADA YETLAYRERK RRESVSSNHS LNSKSSNVEL QNTHEDHSGK GAQTSGSQPN 480
  481 RIVEYEQMMG TGEVVMTPSV EDDRVGIFVT SPEDRLGERE MFSQLIKPRV RYDVEVVTKL 540
  541 VVYTGIAWFA VAIIPIMFEL VGLGTNQLRE Q

Type	Start	End	Confidence
Cytoplasmic	1	92	0.94
Transmembrane Helix	93	115	0.82
Non-Cytoplasmic	116	118	0.57
Transmembrane Helix	119	143	0.76
Cytoplasmic	144	223	0.57
Transmembrane Helix	224	245	0.85
Non-Cytoplasmic	246	253	0.85
Transmembrane Helix	254	275	0.88
Cytoplasmic	276	283	0.89
Transmembrane Helix	284	306	0.84
Non-Cytoplasmic	307	324	0.93
Transmembrane Helix	325	347	0.92
Cytoplasmic	348	535	0.99
Transmembrane Helix	536	558	0.84
Non-Cytoplasmic	559	571	0.82