YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46123287, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAEPQKVL GMPPFVADFL MGGVSAAVSK TAAAPIERVK LLIQNQDEML KTGRLDRKYN  60
   61 GIGDCFKRTM ADEGVMSLWR GNTANVIRYF PTQALNFAFR DKFKKMFGYK KDKDGYAMWM 120
  121 AGNLASGGAA GATSLLFVYS LDYARTRLAN DAKNAKSGGD RQFNGLVDVY KKTLASDGIA 180
  181 GLYRGFMPSV AGIVVYRGLY FGMYDSIKPV VLTGNLQGNF LASFALGWIV TTGAGIASYP 240
  241 LDTIRRRMMM TSGEAVKYKN TMDAARQIVA KEGVKSLFKG AGANILRGVA GAGVLSIYDQ 300
  301 LQVLLFGKAF K

Type	Start	End	Confidence
Cytoplasmic	1	14	0.60
Transmembrane Helix	15	34	0.48
Non-Cytoplasmic	35	115	0.54
Transmembrane Helix	116	139	0.66
Cytoplasmic	140	179	0.77
Transmembrane Helix	180	200	0.77
Non-Cytoplasmic	201	219	0.88
Transmembrane Helix	220	241	0.93
Cytoplasmic	242	311	0.80