YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42551207, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDCNPDYENA TWAFYRFVPS KEANIVFVVL FAITTLLHVL QLWRTRTWYL IPLVVGGVSA  60
   61 SGEVIGYIGR VLNTNEEPGC WTMGPYIMQS VLILIAPALF AASIYMILGR IIILTEGEHH 120
  121 SLIPLKWLTK LFVFGDVASF MLQSSGGGLM AIQDLNKMGE KIIVGGLFVQ LFFFGCFIIV 180
  181 SAVFHIRMLR APTPNSSQTR VRWQTYLATL YVTGVLIWVR SLFRVIEFIE GNDGHLMRSE 240
  241 VWVFVFDGML MLLVLVWMNW FHPGEIGLLI RGEESITNGL ELMKLGGSGR RSRVDTMESL 300
  301 GSGRHLEENT ER

Type	Start	End	Confidence
Non-Cytoplasmic	1	21	0.78
Transmembrane Helix	22	40	0.90
Cytoplasmic	41	47	0.72
Transmembrane Helix	48	69	0.84
Non-Cytoplasmic	70	90	0.82
Transmembrane Helix	91	113	0.88
Cytoplasmic	114	127	0.89
Transmembrane Helix	128	152	0.82
Non-Cytoplasmic	153	161	0.91
Transmembrane Helix	162	186	0.86
Cytoplasmic	187	202	0.88
Transmembrane Helix	203	223	0.89
Non-Cytoplasmic	224	240	0.87
Transmembrane Helix	241	261	0.94
Cytoplasmic	262	312	0.95