YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42551191, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	45	0.83
Non-Cytoplasmic	46	76	0.95
Transmembrane Helix	77	99	0.94
Cytoplasmic	100	106	0.92
Transmembrane Helix	107	129	0.90
Non-Cytoplasmic	130	138	0.87
Transmembrane Helix	139	160	0.91
Cytoplasmic	161	170	0.80
Transmembrane Helix	171	189	0.94
Non-Cytoplasmic	190	202	0.78
Transmembrane Helix	203	227	0.69
Cytoplasmic	228	278	0.89
Transmembrane Helix	279	299	0.87
Non-Cytoplasmic	300	305	0.62
Transmembrane Helix	306	323	0.87
Cytoplasmic	324	331	0.78
Transmembrane Helix	332	351	0.88
Non-Cytoplasmic	352	357	0.86
Transmembrane Helix	358	378	0.94
Cytoplasmic	379	389	0.86
Transmembrane Helix	390	408	0.97
Non-Cytoplasmic	409	415	0.89
Transmembrane Helix	416	439	0.85
Cytoplasmic	440	457	0.90
Transmembrane Helix	458	478	0.92
Non-Cytoplasmic	479	496	0.94
Transmembrane Helix	497	518	0.91
Cytoplasmic	519	524	0.86
Transmembrane Helix	525	544	0.92
Non-Cytoplasmic	545	550	0.68
Transmembrane Helix	551	570	0.92
Cytoplasmic	571	581	0.76
Transmembrane Helix	582	601	0.93
Non-Cytoplasmic	602	612	0.84
Transmembrane Helix	613	631	0.96
Cytoplasmic	632	649	0.90
Transmembrane Helix	650	667	0.97
Non-Cytoplasmic	668	961	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKYKDKDT GVVLSFNGSL VSWAHTTVAY TAFFSALVIG LYLHYHKIVQ NEFYGYPQEW  60
   61 FPSVSATIGD RYPERSFFMI FIAITSGPRF ALVGLWYLLT RKPGQKLPTF VAVMGLVRTL 120
  121 TCGGWTYITS TDDHDWHDIL MISYIVATLP WTTGCIVLSP ANPQAIKYRK YLASAFFGTL 180
  181 VPLIYFFIQH KVHRVAGAYT TYAFFEWSLI IFDVAFDAVT ALDFSTFDIE VRDVRGARKG 240
  241 ENHSSVPSAV LEKEKEKETG GVLAVRFSWS EALDIAAEIY HGYVFWSILT SLGLVVWYFP 300
  301 LWYMGISGYE VSVMTTISPF ILASRSARSL VVNNLRVVHL LSLAGIAAYL VEEPTMRLFS 360
  361 VGFGVFMSCL GWAGTLFAES VHEGRLESKI LGWMIGLILS STAKFAWWTN NPIWPIMHAA 420
  421 NGGWNNTGLV LGIIAALRFT RRTPLTAGLV TSPAKTSSSF LASLGLAGLF FGLHSLLSDT 480
  481 STMILWGWEG YPIRGPYFST HGWLTVLAMS LGVFSGVWQP RVASSWGAYI IGTAGAMFLT 540
  541 FFSHWSGYYG ALTLATYLMA YSVPILVHAA KTSPATTFGN GFLIYNFLVL FHVWVVAYAF 600
  601 VPGGQLVREH TDWVMYTMMT CIGAGVYGIN VSSPQRQTPK RSLPTQQRKL FGISTIMINI 660
  661 LFLISAFQRF PANNHRPYHG EDRILTAGIW TIHFSFDNDM WASEYRMRDL IKELEIDVIG 720
  721 LLESDNQRII MGNRDATQFL AEDLGMYVDY GPGPNKHTWG AALLSKFPIM NSTHHLLPSP 780
  781 VGELAPAIHA TLDVYGQPVD VFVFHSGQEE DPEDRRLQSL YLAELMGSTP RPAFLLSYLV 840
  841 TKPKEGNYNT YVSDKSGMKD VDPSDWDRWC EYILFKRLKR VGYARVSRSS ITDTELQVAK 900
  901 FKIPESKEEI AKLEAQSDKE RNRQVQEKDV PEGWRFPAMF RGDGVRQHRY HVFNEPRVGD 960
  961 V