YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAM17_GIBZE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPLKTFVL RMPATGLVRS SPKASFSTIS AARPASCLSR SPFRKQCFKP AISINKSFSR  60
   61 AVSDKPQPET VQATPQPAPS NVLPPLDWNS FFKLRVKRRR YQMLFSITNG IFAGSGGAIF 120
  121 LSTGSAEPII SQIPLDPFMT LGLMTLAFSG LGWLSGPSVG NQVFYILNRQ WKKQMTQKEA 180
  181 IFFERIKRNR VDPTNSSANN PVPDFYGEKI SSVAGYRSWL KDQKAFNKKK TANFV

Type	Start	End	Confidence
Cytoplasmic	1	102	0.99
Transmembrane Helix	103	124	0.92
Non-Cytoplasmic	125	142	0.83
Transmembrane Helix	143	165	0.88
Cytoplasmic	166	235	0.98