YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46121271, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRLSLGGF LVKAKAALTA PASQRKGPLT FVVGNESADL DSLCSAVVYA YLRSHAPPHT  60
   61 LHIPLSNLPR EDLALRTEMS AVLKHAGLTL KDLLTLSELP DLKPEETRWL LVDHNSLTGP 120
  121 LTKYSEQVTG CVDHHADEDV VRKDAKPRVV ETCGSCMSLV VDETREIWEE LSTKDAQDSD 180
  181 AATENEKLVR LAIGPIMSDT INMTAEAKVR EQDTKAVTFL EERMPFDRAA YFDEISAVKE 240
  241 DISELSLRDI FRKDYKEWNG SGLKLGISCV VQNFDYLVSK AGNPEPLLDA FEDWVKERNL 300
  301 DVASIMTTSH PDGEFQRHLL VWGISDQGRE AVDRFVADSG EKLKLEMWKD GELDKHGHSR 360
  361 FAWRQHDLTS SRKQVAPLLR EALKKS

Type	Start	End	Confidence
Signal Peptide	1	16	0.94
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	386	0.99