YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46123773, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNELRLNDK EDAAAQRAAE QARLRKERRE AKLKAGGSAR LNKITGLGGR IPGEPEPAIA  60
   61 TTTATDAPTP APAVSASVAS STAQHADPDE VDISEHYYET KRADTSRASA PETPEPNISE 120
  121 DQLRQMMLGF ERGNGSGTAS PAPGGVEEDP MMKMMSQLMA GAGLPAGSMP PFPGMPGAVP 180
  181 GQGPPVPQTA VRSSASTNLW RLLHAIVAIG LGFYIVLLTP FTGSKIERER AALAGTTPAD 240
  241 PLIAAAEPEM ETELEHRKKL FFWTFATAET LLLTTRFFLD RRGSPPAGIV GTVMQFVPQP 300
  301 AKGYIEIVMR YGQIFTTVRS DMLACIFVLG AVAWFKG

Type	Start	End	Confidence
Cytoplasmic	1	157	0.90
Transmembrane Helix	158	179	0.77
Non-Cytoplasmic	180	201	0.90
Transmembrane Helix	202	222	0.94
Cytoplasmic	223	259	0.96
Transmembrane Helix	260	279	0.53
Non-Cytoplasmic	280	314	0.44
Transmembrane Helix	315	335	0.83
Cytoplasmic	336	337	0.44